2R4F Oxidoreductase date Aug 31, 2007
title Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase In
authors A.Pavlovsky, J.A.Pfefferkorn, M.S.Harris, B.C.Finzel
compound source
Molecule: 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase
Chain: A, B, C, D
Fragment: Catalytic Domain (Residues 441-875)
Synonym: Hmg-Coa Reductase
Ec: 1.1.1.34
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmgcr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.616 135.334 82.844 90.00 97.53 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand RIE, SO4 enzyme Oxidoreductase E.C.1.1.1.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSubstituted pyrazoles as hepatoselective HMG-CoA reductase inhibitors: discovery of (3R,5R)-7-[2-(4-fluoro-phenyl)-4-isopropyl-5-(4-methyl-benzylcarbamoyl)-2H -pyrazol-3-yl]-3,5-dihydroxyheptanoic acid (PF-3052334) as a candidate for the treatment of hypercholesterolemia., Pfefferkorn JA, Choi C, Larsen SD, Auerbach B, Hutchings R, Park W, Askew V, Dillon L, Hanselman JC, Lin Z, Lu GH, Robertson A, Sekerke C, Harris MS, Pavlovsky A, Bainbridge G, Caspers N, Kowala M, Tait BD, J Med Chem. 2008 Jan 10;51(1):31-45. Epub 2007 Dec 12. PMID:18072721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk]
  • Biological Unit Coordinates (2r4f.pdb1.gz) 260 Kb
  • LPC: Ligand-Protein Contacts for 2R4F
  • CSU: Contacts of Structural Units for 2R4F
  • Likely Quarternary Molecular Structure file(s) for 2R4F
  • Structure Factors (1648 Kb)
  • Retrieve 2R4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R4F from S2C, [Save to disk]
  • Re-refined 2r4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R4F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R4F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r4f_B] [2r4f_A] [2r4f_D] [2r4f_C] [2r4f]
  • SWISS-PROT database: [P04035]
  • Belongs to the resistance-nodulation-cell division (rnd) superfamily according to TCDB.
  • Domain organization of [HMDH_HUMAN] by SWISSPFAM
  • Other resources with information on 2R4F
  • Community annotation for 2R4F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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