2R4H Transferase date Aug 31, 2007
title Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain O Membrane Associated Guanylate Kinase
authors E.Ugochukwu, E.S.Pilka, V.Hozjan, K.L.Kavanagh, C.Cooper, A.C.W.P J.M.Elkins, D.A.Doyle, F.Von Delft, M.Sundstrom, C.H.Arrowsmith J.Weigelt, A.M.Edwards, U.Oppermann, Structural Genomics Conso (Sgc)
compound source
Molecule: Membrane-Associated Guanylate Kinase, Ww And Pdz Containing Protein 1;
Chain: A, B, C
Fragment: 6th Pdz Domain: Residues 1149-1233
Synonym: Bai1-Associated Protein 1, Bap-1, Membrane-Associa Guanylate Kinase Inverted 1, Magi-1, Atrophin-1-Interacting 3, Aip3, Ww Domain-Containing Protein 3, Wwp3, Trinucleotid Containing Gene 19 Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Brain
Gene: Magi1, Baiap1, Bap1, Tnrc19
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.052 77.759 50.182 90.00 101.49 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand HIS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2r4h.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (2r4h.pdb2.gz) 15 Kb
  • Biological Unit Coordinates (2r4h.pdb3.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 2R4H
  • CSU: Contacts of Structural Units for 2R4H
  • Likely Quarternary Molecular Structure file(s) for 2R4H
  • Structure Factors (274 Kb)
  • Retrieve 2R4H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R4H from S2C, [Save to disk]
  • Re-refined 2r4h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R4H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R4H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R4H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r4h] [2r4h_A] [2r4h_B] [2r4h_C]
  • SWISS-PROT database: [Q96QZ7]
  • Domain organization of [MAGI1_HUMAN] by SWISSPFAM
  • Domain found in 2R4H: [PDZ ] by SMART
  • Other resources with information on 2R4H
  • Community annotation for 2R4H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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