2R6O	Structural Genomics, Unknown Function	date	Sep 06, 2007
title	Crystal Structure Of Putative Diguanylate Cyclasephosphodie From Thiobacillus Denitrificans
authors	C.Chang, X.Xu, H.Zheng, A.Savchenko, A.M.Edwards, A.Joachimiak, Mi Center For Structural Genomics (Mcsg)
compound		source
Molecule: Putative Diguanylate Cyclasephosphodiesterase (G Domains); Chain: A, B Fragment: Residues 487-758 Engineered: Yes		Organism_scientific: Thiobacillus Denitrificans Organism_taxid: 292415 Strain: Atcc 25259 Gene: Tbd_1265 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Derivative Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet Derivative
symmetry	Space Group: P 21 21 21	R_factor 0.188 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.051 63.141 173.282 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CL, MG, MSE	enzyme
Gene	TBD
Primary reference	Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases., Tchigvintsev A, Xu X, Singer A, Chang C, Brown G, Proudfoot M, Cui H, Flick R, Anderson WF, Joachimiak A, Galperin MY, Savchenko A, Yakunin AF, J Mol Biol. 2010 Sep 24;402(3):524-38. Epub 2010 Aug 4. PMID:20691189

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (2r6o.pdb1.gz) 88 Kb LPC: Ligand-Protein Contacts for 2R6O CSU: Contacts of Structural Units for 2R6O Likely Quarternary Molecular Structure file(s) for 2R6O Structure Factors (946 Kb) Retrieve 2R6O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R6O from S2C, [Save to disk] Re-refined 2r6o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R6O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R6O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R6O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r6o_B] [2r6o_A] [2r6o] SWISS-PROT database: [Q3SJE6] Domain organization of [Q3SJE6_THIDA] by SWISSPFAM Domain found in 2R6O: [EAL ] by SMART

Other resources with information on 2R6O

Community annotation for 2R6O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---