2R7B	Signaling Protein, Transferase	date	Sep 07, 2007
title	Crystal Structure Of The Phosphoinositide-Dependent Kinase-1 Catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor
authors	A.M.Olland
compound		source
Molecule: Phosphoinositide-Dependent Protein Kinase 1 Chain: A Fragment: Catalytic Domain Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdpk1, Pdk1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 32 2 1	R_factor 0.225 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.281 124.281 47.184 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	253, PSE, SEP, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of dibenzo[c,f][2,7]naphthyridines as potent and selective 3-phosphoinositide-dependent kinase-1 inhibitors., Gopalsamy A, Shi M, Boschelli DH, Williamson R, Olland A, Hu Y, Krishnamurthy G, Han X, Arndt K, Guo B, J Med Chem. 2007 Nov 15;50(23):5547-9. Epub 2007 Oct 17. PMID:17941624

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (2r7b.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 2R7B CSU: Contacts of Structural Units for 2R7B Likely Quarternary Molecular Structure file(s) for 2R7B Retrieve 2R7B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R7B from S2C, [Save to disk]

View 2R7B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R7B

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R7B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r7b_A] [2r7b] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM Domain found in 2R7B: [S_TKc ] by SMART

Other resources with information on 2R7B

Community annotation for 2R7B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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