2R9M Hydrolase date Sep 13, 2007
title Cathepsin S Complexed With Compound 15
authors Y.D.Ward, M.J.Emmanuel, D.S.Thomson, W.Liu, Y.Bekkali, L.L.Frye, M.Girardot, T.Morwick, E.R.R.Young, R.Zindell, M.Hrapchak, M.Det A.White, K.M.Crane, D.M.White, Y.Wang, M.H.Hao, C.A.Grygon, M.E. J.Wildeson, D.Freeman, R.Nelson, A.Capolino, J.D.Peterson, E.L.R M.L.Brown, D.M.Spero
compound source
Molecule: Cathepsin S
Chain: A, B
Ec: 3.4.22.27
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctss
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 2 2
R_factor 0.175 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.273 85.273 150.331 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand Y11 BindingDB enzyme Hydrolase E.C.3.4.22.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2r9m.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2r9m.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2R9M
  • CSU: Contacts of Structural Units for 2R9M
  • Likely Quarternary Molecular Structure file(s) for 2R9M
  • Structure Factors (355 Kb)
  • Retrieve 2R9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R9M from S2C, [Save to disk]
  • Re-refined 2r9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2R9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2R9M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R9M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r9m_B] [2r9m] [2r9m_A]
  • SWISS-PROT database: [P25774]
  • Domain organization of [CATS_HUMAN] by SWISSPFAM
  • Domain found in 2R9M: [Pept_C1 ] by SMART
    • Other resources with information on 2R9M
  • Community annotation for 2R9M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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