2RAA Oxidoreductase date Sep 14, 2007
title Crystal Structure Of Pyruvate Oxidoreductase Subunit Porc (E (Tm0015) From Thermotoga Maritima At 2.12 A Resolution
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Pyruvate Synthase Subunit Porc
Chain: A
Synonym: Pyruvate Oxidoreductase Gamma Chain, Por, Pyruvic- Oxidoreductase Subunit Gamma;
Ec: 1.2.7.1
Engineered: Yes
Organism_scientific: Thermotoga Maritima Msb8
Organism_taxid: 243274
Strain: Msb8, Dsm 3109, Jcm 10099
Atcc: 43589
Gene: Tm0015, Porc, Porg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 41 21 2
R_factor 0.215 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.252 57.252 147.151 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.12 Å
ligand MSE, SO4 enzyme Oxidoreductase E.C.1.2.7.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • pyruvate synthase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2raa.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2RAA
  • CSU: Contacts of Structural Units for 2RAA
  • Likely Quarternary Molecular Structure file(s) for 2RAA
  • Structure Factors (3053 Kb)
  • Retrieve 2RAA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RAA from S2C, [Save to disk]
  • Re-refined 2raa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RAA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RAA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RAA, from MSDmotif at EBI
  • Fold representative 2raa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2raa_A] [2raa]
  • SWISS-PROT database: [O05650]
  • Domain organization of [PORC_THEMA] by SWISSPFAM
  • Other resources with information on 2RAA
  • Community annotation for 2RAA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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