2RCV Oxidoreductase date Sep 20, 2007
title Crystal Structure Of The Bacillus Subtilis Superoxide Dismut
authors P.Liu, H.E.Ewis, Y.J.Huang, C.D.Lu, P.C.Tai, I.T.Weber
compound source
Molecule: Superoxide Dismutase [Mn]
Chain: A, B, C, D, E, F, G, H
Synonym: General Stress Protein 24, Gsp24
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: Subtilis Str. 168
Gene: Soda, Yqgd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phe25
symmetry Space Group: P 1
R_factor 0.211 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.369 84.034 91.951 99.13 105.98 105.58
method X-Ray Diffractionresolution 1.60 Å
ligand MN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G
  • superoxide dismutase activit...


  • Primary referenceStructure of Bacillus subtilis superoxide dismutase., Liu P, Ewis HE, Huang YJ, Lu CD, Tai PC, Weber IT, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt, 12):1003-7. Epub 2007 Nov 21. PMID:18084079
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]
  • Biological Unit Coordinates (2rcv.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (2rcv.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (2rcv.pdb3.gz) 68 Kb
  • Biological Unit Coordinates (2rcv.pdb4.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2RCV
  • CSU: Contacts of Structural Units for 2RCV
  • Likely Quarternary Molecular Structure file(s) for 2RCV
  • Structure Factors (1588 Kb)
  • Retrieve 2RCV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RCV from S2C, [Save to disk]
  • Re-refined 2rcv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RCV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RCV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rcv_H] [2rcv] [2rcv_D] [2rcv_G] [2rcv_F] [2rcv_B] [2rcv_C] [2rcv_A] [2rcv_E]
  • SWISS-PROT database: [P54375]
  • Domain organization of [SODM_BACSU] by SWISSPFAM
  • Other resources with information on 2RCV
  • Community annotation for 2RCV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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