2RDT	Oxidoreductase	date	Sep 25, 2007
title	Crystal Structure Of Human Glycolate Oxidase (Go) In Complex
authors	M.S.Murray, R.P.Holmes, W.T.Lowther
compound		source
Molecule: Hydroxyacid Oxidase 1 Chain: A Synonym: Haox1, Glycolate Oxidase, Gox Ec: 1.1.3.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hao1, Gox1, Haox1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_cell_line: C41(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: I 4	R_factor 0.177 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.322 96.322 79.194 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	2RD, FMN	enzyme	Oxidoreductase E.C.1.1.3.15 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Active Site and Loop 4 Movements within Human Glycolate Oxidase: Implications for Substrate Specificity and Drug Design., Murray MS, Holmes RP, Lowther WT, Biochemistry. 2008 Feb 26;47(8):2439-49. Epub 2008 Jan 24. PMID:18215067

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2rdt.pdb1.gz) 218 Kb LPC: Ligand-Protein Contacts for 2RDT CSU: Contacts of Structural Units for 2RDT Likely Quarternary Molecular Structure file(s) for 2RDT Structure Factors (469 Kb) Retrieve 2RDT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2RDT from S2C, [Save to disk] Re-refined 2rdt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2RDT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2RDT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2RDT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2rdt] [2rdt_A] SWISS-PROT database: [Q9UJM8] Domain organization of [HAOX1_HUMAN] by SWISSPFAM

Other resources with information on 2RDT

Community annotation for 2RDT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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