2RDW Oxidoreductase date Sep 25, 2007
title Crystal Structure Of Human Glycolate Oxidase In Complex With
authors M.S.Murray, R.P.Holmes, W.T.Lowther
compound source
Molecule: Hydroxyacid Oxidase 1
Chain: A
Synonym: Haox1, Glycolate Oxidase, Gox
Ec: 1.1.3.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hao1, Gox1, Haox1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: I 4 2 2
R_factor 0.197 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.649 143.649 110.461 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand FMN, SO4 enzyme Oxidoreductase E.C.1.1.3.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceActive Site and Loop 4 Movements within Human Glycolate Oxidase: Implications for Substrate Specificity and Drug Design., Murray MS, Holmes RP, Lowther WT, Biochemistry. 2008 Feb 26;47(8):2439-49. Epub 2008 Jan 24. PMID:18215067
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2rdw.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 2RDW
  • CSU: Contacts of Structural Units for 2RDW
  • Likely Quarternary Molecular Structure file(s) for 2RDW
  • Structure Factors (327 Kb)
  • Retrieve 2RDW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RDW from S2C, [Save to disk]
  • Re-refined 2rdw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RDW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RDW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RDW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rdw] [2rdw_A]
  • SWISS-PROT database: [Q9UJM8]
  • Domain organization of [HAOX1_HUMAN] by SWISSPFAM
  • Other resources with information on 2RDW
  • Community annotation for 2RDW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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