2RFD	Transferase	date	Sep 28, 2007
title	Crystal Structure Of The Complex Between The Egfr Kinase Dom Mig6 Peptide
authors	X.Zhang, K.A.Pickin, R.Bose, N.Jura, P.A.Cole, J.Kuriyan
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A, B Fragment: Protein Kinase Domain Synonym: Receptor Tyrosine-Protein Kinase Erbb-1 Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egfr, Erbb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculorvirus Expression_system_plasmid: Pfastbac-Ht
Molecule: Erbb Receptor Feedback Inhibitor 1 Chain: C, D Fragment: Sequence Database Residues, 340-364 Synonym: Mitogen-Inducible Gene 6 Protein, Mig-6 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 61 2 2	R_factor 0.234 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 143.964 143.964 237.852 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.60 Å
ligand	SO4	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Inhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface., Zhang X, Pickin KA, Bose R, Jura N, Cole PA, Kuriyan J, Nature. 2007 Nov 29;450(7170):741-4. PMID:18046415

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (2rfd.pdb1.gz) 49 Kb Biological Unit Coordinates (2rfd.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 2RFD CSU: Contacts of Structural Units for 2RFD Likely Quarternary Molecular Structure file(s) for 2RFD Structure Factors (106 Kb) Retrieve 2RFD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2RFD from S2C, [Save to disk] Re-refined 2rfd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2RFD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2RFD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2RFD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2rfd_C] [2rfd] [2rfd_A] [2rfd_D] [2rfd_B] SWISS-PROT database: [P00533] [Q9UJM3] Domain organization of [EGFR_HUMAN] [ERRFI_HUMAN] by SWISSPFAM Domain found in 2RFD: [TyrKc ] by SMART

Other resources with information on 2RFD

Community annotation for 2RFD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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