2RQT Signaling Protein date Dec 14, 2009
title Solution Structure Of The Human Ddef1 Sh3 Domain
authors S.Kaieda, C.Matsui, Y.Mimori-Kiyosue, T.Ikegami
compound source
Molecule: Arf-Gap With Sh3 Domain, Ank Repeat And Ph Domain Containing Protein 1;
Chain: A
Fragment: Unp Residues 1069-1129
Synonym: Ddef1_sh3, 130 Kda Phosphatidylinositol 4,5-Biphos Dependent Arf1 Gtpase-Activating Protein, Pip2-Dependent Ar Adp-Ribosylation Factor-Directed Gtpase-Activating Protein Gtpase-Activating Protein 1, Development And Differentiatio Enhancing Factor 1, Differentiation-Enhancing Factor 1, Def
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Asap1, Ddef1, Kiaa1249
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet32a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of the recognition of the SAMP motif of adenomatous polyposis coli by the Src-homology 3 domain., Kaieda S, Matsui C, Mimori-Kiyosue Y, Ikegami T, Biochemistry. 2010 Jun 29;49(25):5143-53. PMID:20509626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk]
  • Biological Unit Coordinates (2rqt.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2RQT
  • Original NMR restraints for 2RQT from PDB
  • Retrieve 2RQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RQT from S2C, [Save to disk]
  • View 2RQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RQT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RQT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rqt] [2rqt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RQT: [SH3 ] by SMART
  • Other resources with information on 2RQT
  • Community annotation for 2RQT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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