2RRA Rna Binding Protein Rna date Jun 17, 2010
title Solution Structure Of Rna Binding Domain In Human Tra2 Beta Complex With Rna (Gaagaa)
authors K.Tsuda, K.Kuwasako, M.Takahashi, T.Someya, M.Inoue, T.Kigawa, T.T M.Shirouzu, S.Sugano, Y.Muto, S.Yokoyama
compound source
Molecule: Cdna Flj40872 Fis, Clone Tuter2000283, Highly Sim Homo Sapiens Transformer-2-Beta (Sfrs10) Gene;
Chain: A
Fragment: Rna Recognition Motif
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: P040517-05

Molecule: 5'-R(Gpapapgpapa)-3'
Chain: B
Engineered: Yes

Synthetic: Yes
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the dual RNA-recognition modes of human Tra2-beta RRM., Tsuda K, Someya T, Kuwasako K, Takahashi M, He F, Unzai S, Inoue M, Harada T, Watanabe S, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Guntert P, Yokoyama S, Muto Y, Nucleic Acids Res. 2011 Mar;39(4):1538-53. Epub 2010 Oct 5. PMID:20926394
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (581 Kb) [Save to disk]
  • Biological Unit Coordinates (2rra.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2RRA
  • Original NMR restraints for 2RRA from PDB
  • Retrieve 2RRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RRA from S2C, [Save to disk]
  • View 2RRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RRA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RRA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rra] [2rra_B] [2rra_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RRA: [RRM ] by SMART
  • Other resources with information on 2RRA
  • Community annotation for 2RRA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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