2RRM Interplay between phosphatidyl-inositol-phosphates and claudins upon binding to the 1st PDZ domain of zonula occludens 1 date
authors Hiroaki, H., Satomura, K., Goda, N., Umetsu, Y., Taniguchi, R., Ikegami, T., Furuse, M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference(1)H, (13)C, and (15)N resonance assignment of the first PDZ domain of mouse ZO-1., Umetsu Y, Goda N, Taniguchi R, Satomura K, Ikegami T, Furuse M, Hiroaki H, Biomol NMR Assign. 2011 Mar 24. PMID:21431884
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (509 Kb) [Save to disk]
  • Biological Unit Coordinates (2rrm.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2RRM
  • Original NMR restraints for 2RRM from PDB
  • Retrieve 2RRM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RRM from S2C, [Save to disk]
    • View 2RRM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RRM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RRM, from MSDmotif at EBI
  • Fold representative 2rrm from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rrm_A] [2rrm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RRM: [PDZ ] by SMART
    • Other resources with information on 2RRM
  • Community annotation for 2RRM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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