2RS3 STRUCTURAL ANALYSIS OF ANTIVIRAL AGENTS THAT INTERACT WITH THE CAPSID OF HUMAN RHINOVIRUSES date
authors Badger, J., Smith, T.J., Rossmann, M.G.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand W59 enzyme
note 2RS3 supersedes 1RS3
related structures by homologous chain: 2RS1, 2RS5
Gene
Ontology
ChainFunctionProcessComponent
1, 3, 2


4


Primary referenceStructural analysis of antiviral agents that interact with the capsid of human rhinoviruses., Badger J, Minor I, Oliveira MA, Smith TJ, Rossmann MG, Proteins 1989;6(1):1-19. PMID:2558377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (2rs3.pdb1.gz) 6292 Kb
  • LPC: Ligand-Protein Contacts for 2RS3
  • CSU: Contacts of Structural Units for 2RS3
  • Likely Quarternary Molecular Structure file(s) for 2RS3
  • Structure Factors (1077 Kb)
  • Retrieve 2RS3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RS3 from S2C, [Save to disk]
    • View 2RS3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RS3
  • VIPERdb: visual, structural and computational analysis of 2RS3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RS3, from MSDmotif at EBI
  • Genome occurence of 2RS3's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2rs31_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d2rs33_, region 3 [Jmol] [rasmolscript] [script source]
        - Domain d2rs3.1, region 4:,2 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rs3_4] [2rs3] [2rs3_2] [2rs3_3] [2rs3_1]
  • SWISS-PROT database: [P03303]
  • Domain organization of [POLG_HRV14] by SWISSPFAM
    • Other resources with information on 2RS3
  • Community annotation for 2RS3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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