2RUY Solution structures of the DNA-binding domain (ZF10) of immune-related zinc-finger protein ZFAT date
authors Tochio, N., Umehara, T., Kigawa, T., Yokoyama, S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
Primary referenceSolution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT., Tochio N, Umehara T, Nakabayashi K, Yoneyama M, Tsuda K, Shirouzu M, Koshiba S, Watanabe S, Kigawa T, Sasazuki T, Shirasawa S, Yokoyama S, J Struct Funct Genomics. 2015 Mar 24. PMID:25801860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (2ruy.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 2RUY
  • CSU: Contacts of Structural Units for 2RUY
  • Original NMR restraints for 2RUY from PDB
  • Retrieve 2RUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RUY from S2C, [Save to disk]
  • View 2RUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RUY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RUY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ruy] [2ruy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RUY: [ZnF_C2H2 ] by SMART
  • Other resources with information on 2RUY
  • Community annotation for 2RUY at PDBWiki (http://pdbwiki.org)

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