2SRC CRYSTAL STRUCTURE OF HUMAN TYROSINE-PROTEIN KINASE C-SRC, IN COMPLEX WITH AMP-PNP date
authors Xu, W., Doshi, A., Lei, M., Eck, M.J., Harrison, S.C.
compound source
symmetry
R_factor
R_Free 0.2810000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand ANP, PTR enzyme
note 2SRC (Molecule of the Month:pdb43, pdb60)
related structures by homologous chain: 1FMK, 1O48, 1QPC, 1SHF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of c-Src reveal features of its autoinhibitory mechanism., Xu W, Doshi A, Lei M, Eck MJ, Harrison SC, Mol Cell 1999 May;3(5):629-38. PMID:10360179
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (2src.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 2SRC
  • CSU: Contacts of Structural Units for 2SRC
  • Likely Quarternary Molecular Structure file(s) for 2SRC
  • Retrieve 2SRC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2SRC from S2C, [Save to disk]
  • View 2SRC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2SRC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 2SRC from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2SRC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2src_2, region 146-248 [Jmol] [rasmolscript] [script source]
        - Domain d2src_3, region 249-533 [Jmol] [rasmolscript] [script source]
        - Domain d2src_1, region 84-145 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2src] [2src_A]
  • SWISS-PROT database: [P12931]
  • Domain organization of [SRC_HUMAN] by SWISSPFAM
  • Domains found in 2SRC: [SH2] [SH3] [TyrKc ] by SMART
  • Other resources with information on 2SRC
  • Community annotation for 2SRC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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