2TGD Hydrolase Zymogen (Serine Proteinase) date Mar 17, 1986
title Lack Of The Transition State Stabilization Site Is A Factor Inactivity Of Trypsinogen, A Serine Protease Zymogen. Struc Dfp Inhibited Bovine Trypsinogen At 2.1 Angstroms Resolutio
authors M.O.Jones, R.M.Stroud
compound source
Molecule: Trypsinogen
Chain: A
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 31 2 1
R_factor 0.182 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.150 55.150 109.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, DFP enzyme
related structures by homologous chain: 1AUJ, 1SMF
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2tgd.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 2TGD
  • CSU: Contacts of Structural Units for 2TGD
  • Likely Quarternary Molecular Structure file(s) for 2TGD
  • Retrieve 2TGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2TGD from S2C, [Save to disk]
    • View 2TGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2TGD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2TGD, from MSDmotif at EBI
  • Genome occurence of 2TGD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2tgd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2tgd] [2tgd_A]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 2TGD: [Tryp_SPc ] by SMART
    • Other resources with information on 2TGD
  • Community annotation for 2TGD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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