2UUO Ligase date Mar 06, 2007
title Crystal Structure Of Murd Ligase In Complex With D-Glu Conta Sulfonamide Inhibitor
authors J.Humljan, M.Kotnik, C.Contreras-Martel, D.Blanot, U.Urleb, A.Des T.Solmajer, S.Gobec
compound source
Molecule: Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase
Chain: A
Synonym: Udp-N-Acetylmuramoyl-L-Alanyl-D-Glutamate Ligase, Acetylmuramoyl-L-Alanyl-D-Glutamate Synthetase, D-Glutamic Adding Enzyme;
Ec: 6.3.2.9
Engineered: Yes
Other_details: Inhibitor N-(6-Pentoxy-Naphthalene-2-Sulfony Glutamic Acid Bound
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli Dh5[Alpha]
Expression_system_taxid: 668369
Expression_system_plasmid: Pabd16
symmetry Space Group: P 41
R_factor 0.192 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.297 65.297 134.779 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand KCX, LK3, SO4 BindingDB enzyme Ligase E.C.6.3.2.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel Naphthalene-N-sulfonyl-d-glutamic Acid Derivatives as Inhibitors of MurD, a Key Peptidoglycan Biosynthesis Enzyme., Humljan J, Kotnik M, Contreras-Martel C, Blanot D, Urleb U, Dessen A, Solmajer T, Gobec S, J Med Chem. 2008 Nov 13. PMID:19007109
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2uuo.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2UUO
  • CSU: Contacts of Structural Units for 2UUO
  • Likely Quarternary Molecular Structure file(s) for 2UUO
  • Structure Factors (154 Kb)
  • Retrieve 2UUO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UUO from S2C, [Save to disk]
  • Re-refined 2uuo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UUO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UUO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UUO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uuo_A] [2uuo]
  • SWISS-PROT database: [P14900]
  • Domain organization of [MURD_ECOLI] by SWISSPFAM
  • Other resources with information on 2UUO
  • Community annotation for 2UUO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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