2UYZ Ligase date Apr 21, 2007
title Non-Covalent Complex Between Ubc9 And Sumo1
authors P.Knipscheer, W.J.Van Dijk, J.V.Olsen, M.Mann, T.K.Sixma
compound source
Molecule: Sumo-Conjugating Enzyme Ubc9
Chain: A
Synonym: Sumo-Protein Ligase, Ubiquitin-Conjugating Enzyme Ubiquitin-Protein Ligase I, Ubiquitin Carrier Protein I, Ub Carrier Protein 9, Mubc9;
Ec: 6.3.2.19
Engineered: Yes
Mutation: Yes
Other_details: Start Methionine (1) And Second Serine (2) A In Structure;
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector: Pet23a

Molecule: Small Ubiquitin-Related Modifier 1
Chain: B
Fragment: Residues 20-97
Synonym: Sumo-1, Sentrin, Ubiquitin-Like Protein Smt3c, Smt 3, Ubiquitin-Homology Domain Protein Pic1, Ubiquitin-Like P Ubl1, Gap-Modifying Protein 1, Gmp1, Sumo1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector: Pet11a
symmetry Space Group: P 1 21 1
R_factor 0.141 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.481 35.030 72.915 90.00 93.41 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand NA enzyme Ligase E.C.6.3.2.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • ubiquitin-protein transferas...


  • Primary referenceNoncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation., Knipscheer P, van Dijk WJ, Olsen JV, Mann M, Sixma TK, EMBO J. 2007 Jun 6;26(11):2797-807. Epub 2007 May 10. PMID:17491593
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (2uyz.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 2UYZ
  • CSU: Contacts of Structural Units for 2UYZ
  • Likely Quarternary Molecular Structure file(s) for 2UYZ
  • Structure Factors (634 Kb)
  • Retrieve 2UYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UYZ from S2C, [Save to disk]
  • Re-refined 2uyz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UYZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2UYZ, from MSDmotif at EBI
  • Fold representative 2uyz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uyz_A] [2uyz_B] [2uyz]
  • SWISS-PROT database: [P63165] [P63280]
  • Domain organization of [SUMO1_HUMAN] [UBC9_MOUSE] by SWISSPFAM
  • Domains found in 2UYZ: [UBCc] [UBQ ] by SMART
  • Other resources with information on 2UYZ
  • Community annotation for 2UYZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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