2UYZ	Ligase	date	Apr 21, 2007
title	Non-Covalent Complex Between Ubc9 And Sumo1
authors	P.Knipscheer, W.J.Van Dijk, J.V.Olsen, M.Mann, T.K.Sixma
compound		source
Molecule: Sumo-Conjugating Enzyme Ubc9 Chain: A Synonym: Sumo-Protein Ligase, Ubiquitin-Conjugating Enzyme Ubiquitin-Protein Ligase I, Ubiquitin Carrier Protein I, Ub Carrier Protein 9, Mubc9; Ec: 6.3.2.19 Engineered: Yes Mutation: Yes Other_details: Start Methionine (1) And Second Serine (2) A In Structure;		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector: Pet23a
Molecule: Small Ubiquitin-Related Modifier 1 Chain: B Fragment: Residues 20-97 Synonym: Sumo-1, Sentrin, Ubiquitin-Like Protein Smt3c, Smt 3, Ubiquitin-Homology Domain Protein Pic1, Ubiquitin-Like P Ubl1, Gap-Modifying Protein 1, Gmp1, Sumo1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector: Pet11a
symmetry	Space Group: P 1 21 1	R_factor 0.141 R_Free 0.178
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.481 35.030 72.915 90.00 93.41 90.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	NA	enzyme	Ligase E.C.6.3.2.19 BRENDA
Gene Ontology	Chain Function Process Component A ubiquitin-protein transferas...
Primary reference	Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation., Knipscheer P, van Dijk WJ, Olsen JV, Mann M, Sixma TK, EMBO J. 2007 Jun 6;26(11):2797-807. Epub 2007 May 10. PMID:17491593

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (2uyz.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 2UYZ CSU: Contacts of Structural Units for 2UYZ Likely Quarternary Molecular Structure file(s) for 2UYZ Structure Factors (634 Kb) Retrieve 2UYZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2UYZ from S2C, [Save to disk] Re-refined 2uyz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2UYZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2UYZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2UYZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2uyz_A] [2uyz_B] [2uyz] SWISS-PROT database: [P63165] [P63280] Domain organization of [SUMO1_HUMAN] [UBC9_MOUSE] by SWISSPFAM Domains found in 2UYZ: [UBCc] [UBQ ] by SMART

Other resources with information on 2UYZ

Community annotation for 2UYZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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