2UZ1 Lyase date Apr 23, 2007
title 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed With 2-Methyl-2,4-Pentanediol
authors A.Maraite, T.Schmidt, M.B.Ansorge-Schumacher, A.M.Brzozowski, G.Grogan
compound source
Molecule: Benzaldehyde Lyase
Chain: A, D
Ec: 4.1.2.38
Engineered: Yes
Organism_scientific: Pseudomonas Fluorescens
Organism_taxid: 294
Strain: Biovar I
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pbalhis6
Other_details: Recombinant From Expression Plasmid In E. Coli;

Molecule: Benzaldehyde Lyase
Chain: B, C
Ec: 4.1.2.38
Engineered: Yes

Organism_scientific: Pseudomonas Fluorescens
Organism_taxid: 294
Strain: Biovar I
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pbalhis6
Other_details: Recombinant From Expression Plasmid In E. Coli
symmetry Space Group: P 21 21 21
R_factor 0.167 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.462 121.601 162.957 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand MPD, TPP enzyme Lyase E.C.4.1.2.38 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the ThDP-dependent enzyme benzaldehyde lyase refined to 1.65 A resolution., Maraite A, Schmidt T, Ansorge-Schumacher MB, Brzozowski AM, Grogan G, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2007 Jul 1;63(Pt, 7):546-8. Epub 2007 Jun 15. PMID:17620706
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk]
  • Biological Unit Coordinates (2uz1.pdb1.gz) 362 Kb
  • LPC: Ligand-Protein Contacts for 2UZ1
  • CSU: Contacts of Structural Units for 2UZ1
  • Likely Quarternary Molecular Structure file(s) for 2UZ1
  • Structure Factors (1980 Kb)
  • Retrieve 2UZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UZ1 from S2C, [Save to disk]
  • Re-refined 2uz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UZ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UZ1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uz1_A] [2uz1_B] [2uz1_D] [2uz1] [2uz1_C]
  • SWISS-PROT database: [P51853] [Q9F4L3]
  • Domain organization of [BZNB_PSEFL] [Q9F4L3_PSEFL] by SWISSPFAM
  • Other resources with information on 2UZ1
  • Community annotation for 2UZ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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