2V0K Transferase date May 14, 2007
title Characterization Of Substrate Binding And Catalysis Of The Potential Antibacterial Target N-Acetylglucosamine-1- Phosphate Uridyltransferase (Glmu)
authors I.Mochalkin, S.Lightle, J.F.Ohren, N.Y.Chirgadze
compound source
Molecule: Bifunctional Protein Glmu
Chain: A
Synonym: Glmu From Haemophilis Influenzae
Ec: 2.-.-.-
 Organism_scientific: Haemophilus Influenzae
Organism_taxid: 727
symmetry Space Group: H 3 2
R_factor 0.188 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.660 108.660 326.618 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.3 Å
ligand PG4, PGE, SO4, UDP enzyme Transferase E.C.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCharacterization of substrate binding and catalysis in the potential antibacterial target N-acetylglucosamine-1-phosphate uridyltransferase (GlmU)., Mochalkin I, Lightle S, Zhu Y, Ohren JF, Spessard C, Chirgadze NY, Banotai C, Melnick M, McDowell L, Protein Sci. 2007 Dec;16(12):2657-66. PMID:18029420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2v0k.pdb1.gz) 228 Kb
  • LPC: Ligand-Protein Contacts for 2V0K
  • CSU: Contacts of Structural Units for 2V0K
  • Likely Quarternary Molecular Structure file(s) for 2V0K
  • Structure Factors (601 Kb)
  • Retrieve 2V0K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V0K from S2C, [Save to disk]
  • Re-refined 2v0k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V0K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V0K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V0K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v0k_A] [2v0k]
  • SWISS-PROT database: [P43889]
  • Domain organization of [GLMU_HAEIN] by SWISSPFAM
    • Other resources with information on 2V0K
  • Community annotation for 2V0K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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