2V1U Replication date May 30, 2007
title Structure Of The Aeropyrum Pernix Orc1 Protein In Complex With Dna
authors M.Gaudier, B.S.Schuwirth, S.L.Westcott, D.B.Wigley
compound source
Molecule: Cell Division Control Protein 6 Homolog
Chain: A
Synonym: Cdc6 Homolog, Orc1
Organism_scientific: Aeropyrum Pernix
Organism_taxid: 56636

Molecule: 5'-D(Tpcptpcpcpapcpapgpgp Apapapcpgpgpapgpgpgpgpt)-3';
Chain: B
Synonym: 22bp Orb4 Element

Synthetic: Yes
Organism_scientific: Aeropyrum Pernix
Organism_taxid: 56636

Molecule: 5'-D(Apcpcpcpcptpcpcpgptp Tptpcpcptpgptpgpgpapgpa)-3';
Chain: C
Synonym: 22bp Orb4 Element

Synthetic: Yes
Organism_scientific: Aeropyrum Pernix
Organism_taxid: 56636
symmetry Space Group: P 65 2 2
R_factor 0.254 R_Free 0.297
length a length b length c angle alpha angle beta angle gamma
75.700 75.700 395.110 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand ADP, MG enzyme

Primary referenceStructural basis of DNA replication origin recognition by an ORC protein., Gaudier M, Schuwirth BS, Westcott SL, Wigley DB, Science. 2007 Aug 31;317(5842):1213-6. PMID:17761880
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (2v1u.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 2V1U
  • CSU: Contacts of Structural Units for 2V1U
  • Likely Quarternary Molecular Structure file(s) for 2V1U
  • Structure Factors (104 Kb)
  • Retrieve 2V1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V1U from S2C, [Save to disk]
  • Re-refined 2v1u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V1U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V1U, from MSDmotif at EBI
  • Fold representative 2v1u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v1u_B] [2v1u_A] [2v1u] [2v1u_C]
  • SWISS-PROT database: [Q9YEV6]
  • Domain organization of [CDC6_AERPE] by SWISSPFAM
  • Domains found in 2V1U: [AAA] [Cdc6_C ] by SMART
  • Other resources with information on 2V1U
  • Community annotation for 2V1U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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