2V3F acid-beta-glucosidase produced in carrot date
authors Shaaltiel, Y., Bartfeld, D., Hashmueli, S., Baum, G., Brill-Almon, E., Galili, G., Dym, O., Boldin-Adamsky, S.A., Silman, I., Sussman, J.L., Futerman, A.H., Aviezer, D., ISPC, Israel.Structural.Proteomics.Center.
compound source
symmetry
R_factor
R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand BTB, FUC, MAN, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

    • Primary referenceProduction of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system., Shaaltiel Y, Bartfeld D, Hashmueli S, Baum G, Brill-Almon E, Galili G, Dym O, Boldin-Adamsky SA, Silman I, Sussman JL, Futerman AH, Aviezer D, Plant Biotechnol J. 2007 Sep;5(5):579-90. Epub 2007 May 24. PMID:17524049
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (2v3f.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (2v3f.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2V3F
  • CSU: Contacts of Structural Units for 2V3F
  • Likely Quarternary Molecular Structure file(s) for 2V3F
  • Structure Factors (574 Kb)
  • Retrieve 2V3F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V3F from S2C, [Save to disk]
  • Re-refined 2v3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V3F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V3F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v3f] [2v3f_B] [2v3f_A]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
    • Other resources with information on 2V3F
  • Community annotation for 2V3F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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