2V6Z Transferase date Jul 24, 2007
title Solution Structure Of Amino-Terminal Domain Of Human Dna Pol Epsilon Subunit B
authors T.Nuutinen, K.Fredriksson, H.Tossavainen, H.Pospiech, P.Pirila, P A.Annila, J.E.Syvaoja
compound source
Molecule: Dna Polymerase Epsilon Subunit 2
Chain: M
Fragment: Amino Terminal Domain, Residues 1-75
Synonym: Dna Polymerase II Subunit 2, Dna Polymerase Epsilo B, Dpoe2;
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsfduet-1
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.7.7 BRENDA
note 2V6Z is a representative structure
Primary referenceThe solution structure of the amino-terminal domain of human DNA polymerase epsilon subunit B is homologous to C-domains of AAA+ proteins., Nuutinen T, Tossavainen H, Fredriksson K, Pirila P, Permi P, Pospiech H, Syvaoja JE, Nucleic Acids Res. 2008 Sep;36(15):5102-10. Epub 2008 Aug 2. PMID:18676977
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (363 Kb) [Save to disk]
  • Biological Unit Coordinates (2v6z.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2V6Z
  • Original NMR restraints for 2V6Z from PDB
  • Retrieve 2V6Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V6Z from S2C, [Save to disk]
  • View 2V6Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V6Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V6Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v6z_M] [2v6z]
  • SWISS-PROT database: [P56282]
  • Domain organization of [DPOE2_HUMAN] by SWISSPFAM
  • Other resources with information on 2V6Z
  • Community annotation for 2V6Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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