2VBK NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6 date
authors Mueller, J.J., Barbirz, S., Heinle, K., Freiberg, A., Seckler, R., Heinemann, U.
compound source
symmetry
R_factor
R_Free 0.142
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.25
ligand CO2, EDO, GOL, MG, PGR, PO4 enzyme
note 2VBK is a representative structure
Primary referenceAn intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6., Muller JJ, Barbirz S, Heinle K, Freiberg A, Seckler R, Heinemann U, Structure. 2008 May;16(5):766-75. PMID:18462681
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (2vbk.pdb1.gz) 566 Kb
  • LPC: Ligand-Protein Contacts for 2VBK
  • CSU: Contacts of Structural Units for 2VBK
  • Likely Quarternary Molecular Structure file(s) for 2VBK
  • Structure Factors (2400 Kb)
  • Retrieve 2VBK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VBK from S2C, [Save to disk]
  • Re-refined 2vbk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VBK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VBK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VBK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vbk] [2vbk_A]
  • SWISS-PROT database: [Q9XJP3]
  • Domain organization of [TSPE_BPSFV] by SWISSPFAM
    • Other resources with information on 2VBK
  • Community annotation for 2VBK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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