2VDU		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	PO4	enzyme
note	2VDU is a representative structure
Gene Ontology	Chain Function Process Component B, D F, E
Primary reference	Structure of the yeast tRNA m7G methylation complex., Leulliot N, Chaillet M, Durand D, Ulryck N, Blondeau K, van Tilbeurgh H, Structure. 2008 Jan;16(1):52-61. PMID:18184583

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk] Biological Unit Coordinates (2vdu.pdb1.gz) 192 Kb Biological Unit Coordinates (2vdu.pdb2.gz) 97 Kb Biological Unit Coordinates (2vdu.pdb3.gz) 99 Kb LPC: Ligand-Protein Contacts for 2VDU CSU: Contacts of Structural Units for 2VDU Likely Quarternary Molecular Structure file(s) for 2VDU Structure Factors (3106 Kb) Retrieve 2VDU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VDU from S2C, [Save to disk] Re-refined 2vdu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VDU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vdu] [2vdu_B] [2vdu_D] [2vdu_E] [2vdu_F] SWISS-PROT database: [Q03774] [Q12009] Domain found in 2VDU: [WD40 ] by SMART

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