2VE7	Cell Cycle	date	Oct 17, 2007
title	Crystal Structure Of A Bonsai Version Of The Human Ndc80 Com
authors	C.Ciferri, S.Pasqualato, G.Dos Reis, E.Screpanti, A.Maiolica, J.P J.G.De Luca, P.De Wulf, M.Salek, J.Rappsilber, C.A.Moores, E.D.S A.Musacchio
compound		source
Molecule: Kinetochore Protein Hec1, Kinetochore Protein Spc Chain: A, B Fragment: Chimera Of Ndc80 Residues 80-286 With Spc25 Resid 224; Synonym: Ndc80-Spc25 Chimera, Hshec1, Kinetochore-Associate 2, Highly Expressed In Cancer Protein, Retinoblastoma-Assoc Protein Hec, Hspc25; Engineered: Yes Other_details: Peptide Link Between Resi 286 And Resi 1118		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pgex6p-2rbs
Molecule: Kinetochore Protein Nuf2, Kinetochore Protein Spc Chain: C, D Fragment: Chimera Of Nuf2 Residues 1-169 With Spc24 Residue Synonym: Nuf2-Spc24 Chimera, Hnuf2, Hnuf2r, Hsnuf2, Cell Di Cycle-Associated Protein 1, Hspc24; Engineered: Yes Mutation: Yes Other_details: Peptide Link Between Resi 169 And Resi 1122		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pgex6p-2rbs
symmetry	Space Group: P 21 21 2	R_factor 0.232 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 157.653 248.965 58.250 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.88 Å
ligand	GOL, IPH	enzyme
note	2VE7 is a representative structure
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Implications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex., Ciferri C, Pasqualato S, Screpanti E, Varetti G, Santaguida S, Dos Reis G, Maiolica A, Polka J, De Luca JG, De Wulf P, Salek M, Rappsilber J, Moores CA, Salmon ED, Musacchio A, Cell. 2008 May 2;133(3):427-39. PMID:18455984

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk] Biological Unit Coordinates (2ve7.pdb1.gz) 79 Kb Biological Unit Coordinates (2ve7.pdb2.gz) 92 Kb LPC: Ligand-Protein Contacts for 2VE7 CSU: Contacts of Structural Units for 2VE7 Likely Quarternary Molecular Structure file(s) for 2VE7 Structure Factors (405 Kb) Retrieve 2VE7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VE7 from S2C, [Save to disk] Re-refined 2ve7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VE7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VE7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VE7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ve7] [2ve7_A] [2ve7_C] [2ve7_B] [2ve7_D] SWISS-PROT database: [O14777] [Q9BZD4] [Q8NBT2] [Q9HBM1] Domain organization of [NDC80_HUMAN] [NUF2_HUMAN] [SPC24_HUMAN] [SPC25_HUMAN] by SWISSPFAM

Other resources with information on 2VE7

Community annotation for 2VE7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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