2VGG	HUMAN ERYTHROCYTE PYRUVATE KINASE: R479H MUTANT	date
authors	Valentini, G., Chiarelli, L.R., Fortin, R., Dolzan, M., Galizzi, A., Abraham, D.J., Wang, C., Bianchi, P., Zanella, A., Mattevi, A.
compound		source
symmetry		R_factor R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.74
ligand	FBP, K, MN, PGA	enzyme
note	2VGG supersedes 1LIY
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure and function of human erythrocyte pyruvate kinase. Molecular basis of nonspherocytic hemolytic anemia., Valentini G, Chiarelli LR, Fortin R, Dolzan M, Galizzi A, Abraham DJ, Wang C, Bianchi P, Zanella A, Mattevi A, J Biol Chem. 2002 Jun 28;277(26):23807-14. Epub 2002 Apr 17. PMID:11960989

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (310 Kb) [Save to disk] Biological Unit Coordinates (2vgg.pdb1.gz) 299 Kb LPC: Ligand-Protein Contacts for 2VGG CSU: Contacts of Structural Units for 2VGG Likely Quarternary Molecular Structure file(s) for 2VGG Structure Factors (452 Kb) Retrieve 2VGG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VGG from S2C, [Save to disk] Re-refined 2vgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VGG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VGG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VGG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vgg_D] [2vgg_A] [2vgg] [2vgg_C] [2vgg_B] SWISS-PROT database: [P30613] Domain organization of [KPYR_HUMAN] by SWISSPFAM

Other resources with information on 2VGG

Community annotation for 2VGG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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