OCA Atlas for 2VID

2VID

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, A

Primary reference

Enzymatic activity of the Staphylococcus aureus SplB serine protease is induced by substrates containing the sequence Trp-Glu-Leu-Gln., Dubin G, Stec-Niemczyk J, Kisielewska M, Pustelny K, Popowicz GM, Bista M, Kantyka T, Boulware KT, Stennicke HR, Czarna A, Phopaisarn M, Daugherty PS, Thogersen IB, Enghild JJ, Thornberry N, Dubin A, Potempa J, J Mol Biol. 2008 May 30;379(2):343-56. Epub 2008 Apr 3. PMID:18448121

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]

Biological Unit Coordinates (2vid.pdb1.gz) 67 Kb

Biological Unit Coordinates (2vid.pdb2.gz) 34 Kb

Biological Unit Coordinates (2vid.pdb3.gz) 35 Kb

CSU: Contacts of Structural Units for 2VID

Likely Quarternary Molecular Structure file(s) for 2VID

Structure Factors (634 Kb)

Retrieve 2VID in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2VID from S2C, [Save to disk]

Re-refined 2vid structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VID in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vid] [2vid_A] [2vid_B]

SWISS-PROT database: [Q2FXC3]

Domain found in 2VID: [Tryp_SPc ] by SMART

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