2VJV	Dna Binding Protein	date	Dec 13, 2007
title	Crystal Structure Of The Is608 Transposase In Complex With L 26-Mer Dna Hairpin And A 6-Mer Dna Representing The Left En Site
authors	O.Barabas, D.R.Ronning, C.Guynet, A.B.Hickman, B.Ton-Hoang, M.Cha F.Dyda
compound		source
Molecule: Transposase Orfa Chain: A, B Fragment: Residues 2-155 Synonym: Is608 Transposase Engineered: Yes		Organism_scientific: Helicobacter Pylori Organism_taxid: 210 Strain: Pecan2a Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pet32b
Molecule: 5'-D(Dadadadgdcdcdcdcdtdadgdcdtpdt Dtdtdadgdcdtdadtdgdgdgdgp)-3'; Chain: C, D Synonym: Left End 26-Mer Hairpin Engineered: Yes		Synthetic: Yes Organism_scientific: Helicobacter Pylori Organism_taxid: 210
Molecule: 5'-D(Dtdadtdtdadcp)-3' Chain: E, F Synonym: 6-Mer Left End Cleavage Site Engineered: Yes		Synthetic: Yes Organism_scientific: Helicobacter Pylori Organism_taxid: 210
symmetry	Space Group: P 21 21 21	R_factor 0.194 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.292 72.407 110.174 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanism of IS200/IS605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection., Barabas O, Ronning DR, Guynet C, Hickman AB, Ton-Hoang B, Chandler M, Dyda F, Cell. 2008 Jan 25;132(2):208-20. PMID:18243097

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (2vjv.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 2VJV CSU: Contacts of Structural Units for 2VJV Likely Quarternary Molecular Structure file(s) for 2VJV Structure Factors (263 Kb) Retrieve 2VJV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VJV from S2C, [Save to disk] Re-refined 2vjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VJV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VJV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VJV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vjv_A] [2vjv_F] [2vjv_C] [2vjv_E] [2vjv] [2vjv_D] [2vjv_B] SWISS-PROT database: [Q933Z0] Domain organization of [Q933Z0_HELPY] by SWISSPFAM Domain found in 2VJV: [Y1_Tnp ] by SMART

Other resources with information on 2VJV

Community annotation for 2VJV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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