2VKR 3Fe-4S, 4Fe-4S plus Zn Acidianus ambivalens ferredoxin date
authors Frazao, C., Aragao, D., Coelho, R., Leal, S.S., Gomes, C.M., Teixeira, M., Carrondo, M.A.
compound source
symmetry
R_factor
R_Free 0.2729
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.01
ligand F3S, SF4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B
  • electron transfer activity


    • Primary referenceCrystallographic analysis of the intact metal centres [3Fe-4S](1+/0) and [4Fe-4S](2+/1+) in a Zn(2+)-containing ferredoxin., Frazao C, Aragao D, Coelho R, Leal SS, Gomes CM, Teixeira M, Carrondo MA, FEBS Lett. 2008 Mar 5;582(5):763-7. Epub 2008 Feb 5. PMID:18258200
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (2vkr.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (2vkr.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (2vkr.pdb3.gz) 20 Kb
  • Biological Unit Coordinates (2vkr.pdb4.gz) 20 Kb
  • Biological Unit Coordinates (2vkr.pdb5.gz) 20 Kb
  • Biological Unit Coordinates (2vkr.pdb6.gz) 20 Kb
  • Biological Unit Coordinates (2vkr.pdb7.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2VKR
  • CSU: Contacts of Structural Units for 2VKR
  • Likely Quarternary Molecular Structure file(s) for 2VKR
  • Structure Factors (491 Kb)
  • Retrieve 2VKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VKR from S2C, [Save to disk]
  • Re-refined 2vkr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VKR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VKR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vkr_D] [2vkr_B] [2vkr_C] [2vkr_G] [2vkr_E] [2vkr_A] [2vkr_F] [2vkr]
  • SWISS-PROT database: [P49949]
  • Domain organization of [FER_ACIAM] by SWISSPFAM
    • Other resources with information on 2VKR
  • Community annotation for 2VKR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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