2VLO K97A mutant of E9 DNase domain in complex with Im9 date
authors Keeble, A.H., Joachimiak, L.A., Mate, M.J., Meenan, N., Kirkpatrick, N., Baker, D., Kleanthous, C.
compound source
symmetry
R_factor
R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceExperimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases., Keeble AH, Joachimiak LA, Mate MJ, Meenan N, Kirkpatrick N, Baker D, Kleanthous C, J Mol Biol. 2008 Apr 3;. PMID:18471830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2vlo.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2VLO
  • CSU: Contacts of Structural Units for 2VLO
  • Likely Quarternary Molecular Structure file(s) for 2VLO
  • Structure Factors (136 Kb)
  • Retrieve 2VLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VLO from S2C, [Save to disk]
  • Re-refined 2vlo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VLO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VLO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vlo_B] [2vlo] [2vlo_A]
  • SWISS-PROT database: [P09883] [P13479]
  • Belongs to the channel-forming colicin (colicin) family according to TCDB.
  • Domain organization of [CEA9_ECOLX] [IMM9_ECOLX] by SWISSPFAM
  • Domain found in 2VLO: [HNHc ] by SMART
  • Other resources with information on 2VLO
  • Community annotation for 2VLO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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