2VO6	Transferase	date	Feb 08, 2008
title	Structure Of Pka-Pkb Chimera Complexed With 4-(4- Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)Pyrimidin-4-Yl)Piperidin- 4-Ylamine
authors	J.J.Caldwell, T.G.Davies, A.Donald, T.Mchardy, M.G.Rowlands, G.W.Aherne, L.K.Hunter, K.Taylor, R.Ruddle, F.I.Raynaud, M.Verdonk, P.Workman, M.D.Garrett, I.Collins
compound		source
Molecule: Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit; Chain: A Synonym: Pka C-Alpha, Protein Kinase A Ec: 2.7.11.11 Engineered: Yes Mutation: Yes		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha Chain: I Fragment: Residues 6-25 Synonym: Pki-Alpha, Camp- Dependent Protein Kinase Inhibitor, Musclebrain Isoform, Pki		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.172 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.910 74.291 80.104 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.97 Å
ligand	CL, M05, SEP, TPO	enzyme	Transferase E.C.2.7.11.11 BRENDA
Gene Ontology	Chain Function Process Component A I
Primary reference	Identification of 4-(4-Aminopiperidin-1-yl)-7H-pyrrolo[2,3-d]pyrimidines as Selective Inhibitors of Protein Kinase B through Fragment Elaboration., Caldwell JJ, Davies TG, Donald A, McHardy T, Rowlands MG, Aherne GW, Hunter LK, Taylor K, Ruddle R, Raynaud FI, Verdonk M, Workman P, Garrett MD, Collins I, J Med Chem. 2008 Apr 10;51(7):2147-57. Epub 2008 Mar 18. PMID:18345609

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (2vo6.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 2VO6 CSU: Contacts of Structural Units for 2VO6 Likely Quarternary Molecular Structure file(s) for 2VO6 Structure Factors (523 Kb) Retrieve 2VO6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VO6 from S2C, [Save to disk] Re-refined 2vo6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VO6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VO6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VO6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vo6_A] [2vo6_I] [2vo6] SWISS-PROT database: [P61925] [P00517] Domain organization of [IPKA_HUMAN] [KAPCA_BOVIN] by SWISSPFAM Domains found in 2VO6: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 2VO6

Community annotation for 2VO6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---