2VQE date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand K, MG, PAR, TM2, ZN enzyme
note 2VQE is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


Primary referenceModified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding., Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki T, J Biol Chem. 2008 Jul 4;283(27):18801-11. Epub 2008 May 2. PMID:18456657
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1045 Kb) [Save to disk]
  • Biological Unit Coordinates (2vqe.pdb1.gz) 1024 Kb
  • LPC: Ligand-Protein Contacts for 2VQE
  • CSU: Contacts of Structural Units for 2VQE
  • Likely Quarternary Molecular Structure file(s) for 2VQE
  • Structure Factors (4882 Kb)
  • Retrieve 2VQE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VQE from S2C, [Save to disk]
  • Re-refined 2vqe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VQE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vqe] [2vqe_A] [2vqe_B] [2vqe_C] [2vqe_D] [2vqe_E] [2vqe_F] [2vqe_G] [2vqe_H] [2vqe_I] [2vqe_J] [2vqe_K] [2vqe_L] [2vqe_M] [2vqe_N] [2vqe_O] [2vqe_P] [2vqe_Q] [2vqe_R] [2vqe_S] [2vqe_T] [2vqe_U] [2vqe_X] [2vqe_Y]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [P24321] [P80382] [Q5SHP2] [P62661] [P80371] [P80372] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P62669] [Q5SIH3]
  • Domains found in 2VQE: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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