2VQF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand K, MG, PAR, TM2, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


Primary referenceModified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding., Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki T, J Biol Chem. 2008 Jul 4;283(27):18801-11. Epub 2008 May 2. PMID:18456657
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1047 Kb) [Save to disk]
  • Biological Unit Coordinates (2vqf.pdb1.gz) 1025 Kb
  • LPC: Ligand-Protein Contacts for 2VQF
  • CSU: Contacts of Structural Units for 2VQF
  • Likely Quarternary Molecular Structure file(s) for 2VQF
  • Structure Factors (2871 Kb)
  • Retrieve 2VQF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VQF from S2C, [Save to disk]
  • Re-refined 2vqf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VQF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vqf] [2vqf_A] [2vqf_B] [2vqf_C] [2vqf_D] [2vqf_E] [2vqf_F] [2vqf_G] [2vqf_H] [2vqf_I] [2vqf_J] [2vqf_K] [2vqf_L] [2vqf_M] [2vqf_N] [2vqf_O] [2vqf_P] [2vqf_Q] [2vqf_R] [2vqf_S] [2vqf_T] [2vqf_U] [2vqf_X] [2vqf_Y]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [P24321] [P80382] [Q5SHP2] [P62661] [P80371] [P80372] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P62669] [Q5SIH3]
  • Domains found in 2VQF: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science