2VR3	Cell Adhesion	date	Mar 25, 2008
title	Structural And Biochemical Characterization Of Fibrinogen Bi Clfa From Staphylocccus Aureus
authors	V.K.Ganesh, J.J.Rivera, E.Smeds, M.G.Bowden, E.R.Wann, S.Gurusida J.R.Fitzgerald, M.Hook
compound		source
Molecule: Clumping Factor A Chain: A, B Fragment: N2n3, Residues 229-545 Synonym: Fibrinogen-Binding Protein A, Fibrinogen Receptor Engineered: Yes Mutation: Yes Other_details: Engineered Disulfide Bond Between 327 And 54		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Fibrinogen Gamma-Chain Chain: C, D Fragment: C-Terminal Gamma-Chain Peptide Analog, Residues 4 Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.211 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.427 61.836 81.777 85.44 81.84 82.45
method	X-Ray Diffraction	resolution	1.95 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	A structural model of the Staphylococcus aureus ClfA-fibrinogen interaction opens new avenues for the design of anti-staphylococcal therapeutics., Ganesh VK, Rivera JJ, Smeds E, Ko YP, Bowden MG, Wann ER, Gurusiddappa S, Fitzgerald JR, Hook M, PLoS Pathog. 2008 Nov;4(11):e1000226. Epub 2008 Nov 28. PMID:19043557

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (2vr3.pdb1.gz) 53 Kb Biological Unit Coordinates (2vr3.pdb2.gz) 54 Kb CSU: Contacts of Structural Units for 2VR3 Likely Quarternary Molecular Structure file(s) for 2VR3 Structure Factors (636 Kb) Retrieve 2VR3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VR3 from S2C, [Save to disk] Re-refined 2vr3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VR3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VR3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VR3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vr3_D] [2vr3] [2vr3_A] [2vr3_C] [2vr3_B] SWISS-PROT database: [Q2G015] [P02679] Domain organization of [CLFA_STAA8] [FIBG_HUMAN] by SWISSPFAM

Other resources with information on 2VR3

Community annotation for 2VR3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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