2VRJ Hydrolase date Apr 09, 2008
title Beta-Glucosidase From Thermotoga Maritima In Complex With N- Deoxy-6-Oxa-N-(Thio)Carbamoylcalystegine
authors M.Aguilar, T.M.Gloster, M.I.Garcia-Moreno, C.Ortiz Mellet, G.J.D A.Llebaria, J.Casas, M.Egido-Gabas, J.M.Garcia Fernandez
compound source
Molecule: Beta-Glucosidase A
Chain: A, B
Fragment: Residues 2-446
Synonym: Gentiobiase, Cellobiase, Beta-D- Glucoside Glucohy Beta-Glucosidase;
Ec: 3.2.1.21
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.696 94.409 113.026 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ACT, CA, NCW enzyme Hydrolase E.C.3.2.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular Basis for beta-Glucosidase Inhibition by Ring-Modified Calystegine Analogues., Aguilar M, Gloster TM, Garcia-Moreno MI, Ortiz Mellet C, Davies GJ, Llebaria A, Casas J, Egido-Gabas M, Garcia Fernandez JM, Chembiochem. 2008 Oct 2. PMID:18833549
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (2vrj.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (2vrj.pdb2.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 2VRJ
  • CSU: Contacts of Structural Units for 2VRJ
  • Likely Quarternary Molecular Structure file(s) for 2VRJ
  • Structure Factors (908 Kb)
  • Retrieve 2VRJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VRJ from S2C, [Save to disk]
  • Re-refined 2vrj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VRJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VRJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VRJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vrj_B] [2vrj_A] [2vrj]
  • SWISS-PROT database: [Q08638]
  • Domain organization of [BGLA_THEMA] by SWISSPFAM
  • Other resources with information on 2VRJ
  • Community annotation for 2VRJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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