2VRY	Oxygen Storage Transport	date	Apr 16, 2008
title	Mouse Neuroglobin With Heme Iron In The Reduced Ferrous Stat
authors	A.Arcovito, T.Moschetti, P.D'Angelo, G.Mancini, B.Vallone, M.Brun S.Della Longa
compound		source
Molecule: Neuroglobin Chain: A Engineered: Yes Mutation: Yes Other_details: The Protein Contains Three Additional Amino The N Term Gly, Ser, His		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: Fvbn Organ: Brain Cell: Neurons Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_plasmid: Pet14b
symmetry	Space Group: H 3 2	R_factor 0.185 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.920 87.920 113.646 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.87 Å
ligand	HEM, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	An X-ray diffraction and X-ray absorption spectroscopy joint study of neuroglobin., Arcovito A, Moschetti T, D'Angelo P, Mancini G, Vallone B, Brunori M, Della Longa S, Arch Biochem Biophys. 2008 Jul 1;475(1):7-13. Epub 2008 Mar 29. PMID:18406335

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (2vry.pdb1.gz) 161 Kb Biological Unit Coordinates (2vry.pdb2.gz) 28 Kb LPC: Ligand-Protein Contacts for 2VRY CSU: Contacts of Structural Units for 2VRY Likely Quarternary Molecular Structure file(s) for 2VRY Structure Factors (93 Kb) Retrieve 2VRY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VRY from S2C, [Save to disk] Re-refined 2vry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VRY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VRY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VRY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vry_A] [2vry] SWISS-PROT database: [Q9ER97] Domain organization of [NGB_MOUSE] by SWISSPFAM

Other resources with information on 2VRY

Community annotation for 2VRY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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