2VS5	Transferase	date	Apr 18, 2008
title	The Binding Of Udp-Galactose By An Active Site Mutant Of Alp Galactosyltransferase (Alpha3gt)
authors	P.Tumbale, H.Jamaluddin, N.Thiyagarajan, K.Brew, K.R.Acharya
compound		source
Molecule: N-Acetyllactosaminide Alpha-1,3-Galactosyltransfe Chain: A, B Fragment: Residues 80-365 Synonym: Galactosyltransferase, Udp-Galactose\: Beta-D-Gala 4-N-Acetyl-D-Glucosaminide Alpha-1,3-Galactosyltransferase, Galactosyltransferase; Ec: 2.4.1.87 Engineered: Yes Mutation: Yes		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.236 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.027 91.370 94.630 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.82 Å
ligand	GDU, MN, MPD	enzyme	Transferase E.C.2.4.1.87 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Basis of UDP-galactose Binding by alpha-1,3-Galactosyltransferase (alpha3GT): Role of Negative Charge on Aspartic Acid 316 in Structure and Activity., Tumbale P, Jamaluddin H, Thiyagarajan N, Brew K, Acharya KR, Biochemistry. 2008 Jul 24. PMID:18651752

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (2vs5.pdb1.gz) 55 Kb Biological Unit Coordinates (2vs5.pdb2.gz) 54 Kb LPC: Ligand-Protein Contacts for 2VS5 CSU: Contacts of Structural Units for 2VS5 Likely Quarternary Molecular Structure file(s) for 2VS5 Structure Factors (553 Kb) Retrieve 2VS5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VS5 from S2C, [Save to disk] Re-refined 2vs5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VS5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VS5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VS5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vs5_A] [2vs5_B] [2vs5] SWISS-PROT database: [P14769] Domain organization of [GGTA1_BOVIN] by SWISSPFAM

Other resources with information on 2VS5

Community annotation for 2VS5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---