2VSC	Cell Adhesion	date	Apr 22, 2008
title	Structure Of The Immunoglobulin-Superfamily Ectodomain Of Hu
authors	D.Hatherley, S.C.Graham, J.Turner, K.Harlos, D.I.Stuart, A.N.Barc
compound		source
Molecule: Leukocyte Surface Antigen Cd47 Chain: A, B, C, D Fragment: Immunoglobulin-Superfamily Ectodomain, Residues 1 Synonym: Integrin-Associated Protein, Iap, Antigenic Surfac Determinant Protein Oa3, Protein Mer6, Cd47; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_variant: Lec3.2.8.1 Expression_system_cell_line: Cho Expression_system_vector_type: Plasmid Expression_system_plasmid: Pee14
symmetry	Space Group: C 1 2 1	R_factor 0.216 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 201.137 47.502 56.811 90.00 99.31 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MG, NAG, PCA	enzyme
Primary reference	Paired receptor specificity explained by structures of signal regulatory proteins alone and complexed with CD47., Hatherley D, Graham SC, Turner J, Harlos K, Stuart DI, Barclay AN, Mol Cell. 2008 Jul 25;31(2):266-77. PMID:18657508

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk] Biological Unit Coordinates (2vsc.pdb1.gz) 84 Kb Biological Unit Coordinates (2vsc.pdb2.gz) 83 Kb LPC: Ligand-Protein Contacts for 2VSC CSU: Contacts of Structural Units for 2VSC Likely Quarternary Molecular Structure file(s) for 2VSC Structure Factors (566 Kb) Retrieve 2VSC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VSC from S2C, [Save to disk] Re-refined 2vsc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VSC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VSC

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2VSC, from MSDmotif at EBI Fold representative 2vsc from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vsc_B] [2vsc_D] [2vsc] [2vsc_C] [2vsc_A] SWISS-PROT database: [Q08722] Belongs to the osteoclast fusion complex (ofc) family according to TCDB. Domain organization of [CD47_HUMAN] by SWISSPFAM Domain found in 2VSC: [IG_like ] by SMART

Other resources with information on 2VSC

Community annotation for 2VSC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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