2VT5 Hydrolase date May 09, 2008
title Fructose-1,6-Bisphosphatase(D-Fructose-1,6-Bisphosphate -1-Phosphohydrolase) (E.C. Complexed With A Dual Binding Amp Site Inhibitor
authors A.Ruf, C.Joseph, J.Benz, B.Fol, T.Tetaz
compound source
Molecule: Fructose-1,6-Bisphosphatase 1
Chain: A, B, C, D, E, F, G, H
Synonym: D-Fructose-1,6- Bisphosphate 1-Phosphohydrolase 1, Fbpase 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.247
length a length b length c angle alpha angle beta angle gamma
65.964 284.611 83.375 90.00 97.52 90.00
method X-Ray Diffractionresolution 2.2 Å
ligand ROK BindingDB enzyme Hydrolase E.C. BRENDA
F, A, E, B, H, C, D, G

Primary referenceAllosteric FBPase inhibitors gain 10(5) times in potency when simultaneously binding two neighboring AMP sites., Hebeisen P, Kuhn B, Kohler P, Gubler M, Huber W, Kitas E, Schott B, Benz J, Joseph C, Ruf A, Bioorg Med Chem Lett. 2008 Jul 5. PMID:18650089
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (408 Kb) [Save to disk]
  • Biological Unit Coordinates (2vt5.pdb1.gz) 204 Kb
  • Biological Unit Coordinates (2vt5.pdb2.gz) 203 Kb
  • LPC: Ligand-Protein Contacts for 2VT5
  • CSU: Contacts of Structural Units for 2VT5
  • Likely Quarternary Molecular Structure file(s) for 2VT5
  • Structure Factors (1971 Kb)
  • Retrieve 2VT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VT5 from S2C, [Save to disk]
  • Re-refined 2vt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VT5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VT5, from MSDmotif at EBI
  • Fold representative 2vt5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vt5_A] [2vt5_D] [2vt5_G] [2vt5] [2vt5_B] [2vt5_F] [2vt5_C] [2vt5_E] [2vt5_H]
  • SWISS-PROT database: [P09467]
  • Domain organization of [F16P1_HUMAN] by SWISSPFAM
  • Other resources with information on 2VT5
  • Community annotation for 2VT5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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