2VUJ Hydrolase date May 26, 2008
title Environmentally Isolated Gh11 Xylanase
authors C.Dumon, A.Varvak, M.A.Wall, J.E.Flint, R.J.Lewis, J.H.Lakey, P.Lu S.Healey, T.Todaro, G.Desantis, M.Sun, L.Parra-Gessert, X.Tan, D. H.J.Gilbert
compound source
Molecule: Gh11 Xylanase
Chain: A
Ec: 3.2.1.8
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pse420-Chis
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.301 63.368 75.266 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering Hyperthermostability into a GH11 Xylanase Is Mediated by Subtle Changes to Protein Structure., Dumon C, Varvak A, Wall MA, Flint JE, Lewis RJ, Lakey JH, Morland C, Luginbuhl P, Healey S, Todaro T, Desantis G, Sun M, Parra-Gessert L, Tan X, Weiner DP, Gilbert HJ, J Biol Chem. 2008 Aug 15;283(33):22557-64. Epub 2008 May 30. PMID:18515360
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2vuj.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2VUJ
  • CSU: Contacts of Structural Units for 2VUJ
  • Likely Quarternary Molecular Structure file(s) for 2VUJ
  • Structure Factors (219 Kb)
  • Retrieve 2VUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VUJ from S2C, [Save to disk]
  • Re-refined 2vuj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VUJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VUJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vuj_A] [2vuj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2VUJ
  • Community annotation for 2VUJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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