2VWL	Blood Clotting	date	Jun 26, 2008
title	Aminopyrrolidine Factor Xa Inhibitor
authors	K.Groebke-Zbinden, D.W.Banner, J.M.Benz, F.Blasco, G.Decoret, J.H B.Kuhn, N.Panday, F.Ricklin, P.Risch, D.Schlatter, M.Stahl, R.Ung
compound		source
Molecule: Activated Factor Xa Heavy Chain Chain: A Fragment: Peptidase S1, Residues 235-475 Ec: 3.4.21.6 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Factor X Light Chain Chain: L Fragment: Egf2, Residues 126-180 Ec: 3.4.21.6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.194 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.800 105.800 49.720 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CA, CL, LZH, NA BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design of novel aminopyrrolidine factor Xa inhibitors from a screening hit., Zbinden KG, Anselm L, Banner DW, Benz J, Blasco F, Decoret G, Himber J, Kuhn B, Panday N, Ricklin F, Risch P, Schlatter D, Stahl M, Thomi S, Unger R, Haap W, Eur J Med Chem. 2009 Jul;44(7):2787-95. Epub 2009 Jan 3. PMID:19200624

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (2vwl.pdb1.gz) 51 Kb Biological Unit Coordinates (2vwl.pdb2.gz) 45 Kb Biological Unit Coordinates (2vwl.pdb3.gz) 9 Kb LPC: Ligand-Protein Contacts for 2VWL CSU: Contacts of Structural Units for 2VWL Likely Quarternary Molecular Structure file(s) for 2VWL Structure Factors (587 Kb) Retrieve 2VWL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VWL from S2C, [Save to disk] Re-refined 2vwl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VWL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VWL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VWL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vwl_L] [2vwl_A] [2vwl] SWISS-PROT database: [P00742] Domain organization of [FA10_HUMAN] by SWISSPFAM Domains found in 2VWL: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 2VWL

Community annotation for 2VWL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---