2VYA Hydrolase date Jul 22, 2008
title Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated With The Drug-Like Inhibitor Pf-750
authors M.Mileni, D.S.Johnson, Z.Wang, D.S.Everdeen, M.Liimatta, B.Pabst, K.Bhattacharya, R.A.Nugent, S.Kamtekar, B.F.Cravatt, K.Ahn, R.C.
compound source
Molecule: Fatty-Acid Amide Hydrolase 1
Chain: A, B
Fragment: Residues 32-579
Synonym: Fatty Acid Amide Hydrolase, Oleamide Hydrolase 1, Anandamide Amidohydrolase 1;
Ec: 3.5.1.4
Engineered: Yes
Mutation: Yes
Other_details: S241 Is Carbamylated To 4-(Quinolin-3- Ylmethyl)Piperidine-1-Carbaldehyde Chemical Formula, C16h1
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: A.I.
Expression_system_vector: Pet28a
symmetry Space Group: P 32 2 1
R_factor 0.188 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.690 103.690 253.870 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand CL, PF7, UNX enzyme Hydrolase E.C.3.5.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • phospholipid binding


  • Primary referenceStructure-guided inhibitor design for human FAAH by interspecies active site conversion., Mileni M, Johnson DS, Wang Z, Everdeen DS, Liimatta M, Pabst B, Bhattacharya K, Nugent RA, Kamtekar S, Cravatt BF, Ahn K, Stevens RC, Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):12820-4. Epub 2008 Aug 27. PMID:18753625
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (2vya.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 2VYA
  • CSU: Contacts of Structural Units for 2VYA
  • Likely Quarternary Molecular Structure file(s) for 2VYA
  • Structure Factors (561 Kb)
  • Retrieve 2VYA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VYA from S2C, [Save to disk]
  • Re-refined 2vya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VYA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VYA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2VYA, from MSDmotif at EBI
  • Fold representative 2vya from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vya_A] [2vya_B] [2vya]
  • SWISS-PROT database: [P97612]
  • Domain organization of [FAAH1_RAT] by SWISSPFAM
  • Other resources with information on 2VYA
  • Community annotation for 2VYA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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