2VYA	Hydrolase	date	Jul 22, 2008
title	Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated W Drug-Like Inhibitor Pf-750
authors	M.Mileni, D.S.Johnson, Z.Wang, D.S.Everdeen, M.Liimatta, B.Pabst, K.Bhattacharya, R.A.Nugent, S.Kamtekar, B.F.Cravatt, K.Ahn, R.C.
compound		source
Molecule: Fatty-Acid Amide Hydrolase 1 Chain: A, B Fragment: Residues 32-579 Synonym: Fatty Acid Amide Hydrolase, Oleamide Hydrolase 1, Amidohydrolase 1; Ec: 3.5.1.4 Engineered: Yes Mutation: Yes Other_details: S241 Is Carbamylated To 4-(Quinolin-3-Ylmeth Piperidine-1-Carbaldehyde Chemical Formula, C16h18n2o		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: A.I. Expression_system_vector: Pet28a
symmetry	Space Group: P 32 2 1	R_factor 0.188 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.690 103.690 253.870 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	CL, PF7, UNX	enzyme	Hydrolase E.C.3.5.1.4 BRENDA
Gene Ontology	Chain Function Process Component A, B phospholipid binding
Primary reference	Structure-guided inhibitor design for human FAAH by interspecies active site conversion., Mileni M, Johnson DS, Wang Z, Everdeen DS, Liimatta M, Pabst B, Bhattacharya K, Nugent RA, Kamtekar S, Cravatt BF, Ahn K, Stevens RC, Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):12820-4. Epub 2008 Aug 27. PMID:18753625

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk] Biological Unit Coordinates (2vya.pdb1.gz) 164 Kb LPC: Ligand-Protein Contacts for 2VYA CSU: Contacts of Structural Units for 2VYA Likely Quarternary Molecular Structure file(s) for 2VYA Structure Factors (561 Kb) Retrieve 2VYA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VYA from S2C, [Save to disk] Re-refined 2vya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VYA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VYA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VYA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vya_A] [2vya_B] [2vya] SWISS-PROT database: [P97612] Domain organization of [FAAH1_RAT] by SWISSPFAM

Other resources with information on 2VYA

Community annotation for 2VYA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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