2VZ1	Oxidoreductase	date	Jul 29, 2008
title	Premat-Galactose Oxidase
authors	M.S.Rogers, R.Hurtado-Guerrero, S.J.Firbank, M.A.Halcrow, D.M.Do S.E.V.Phillips, P.F.Knowles, M.J.Mcpherson
compound		source
Molecule: Galactose Oxidase Chain: A Synonym: Gao, Gaoase, Go, Premat-Galactose Oxidase Ec: 1.1.3.9 Engineered: Yes		Organism_scientific: Gibberella Zeae Organism_taxid: 5518 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: X33 Expression_system_vector: Ppiczalphab
symmetry	Space Group: C 1 2 1	R_factor 0.177 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.481 88.088 84.935 90.00 116.67 90.00
method	X-Ray Diffraction	resolution	1.91 Å
ligand	ACT, CA	enzyme	Oxidoreductase E.C.1.1.3.9 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Cross-link formation of the cysteine 228-tyrosine 272 catalytic cofactor of galactose oxidase does not require dioxygen., Rogers MS, Hurtado-Guerrero R, Firbank SJ, Halcrow MA, Dooley DM, Phillips SE, Knowles PF, McPherson MJ, Biochemistry. 2008 Sep 30;47(39):10428-39. Epub 2008 Sep 5. PMID:18771294

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (2vz1.pdb1.gz) 106 Kb LPC: Ligand-Protein Contacts for 2VZ1 CSU: Contacts of Structural Units for 2VZ1 Likely Quarternary Molecular Structure file(s) for 2VZ1 Structure Factors (687 Kb) Retrieve 2VZ1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VZ1 from S2C, [Save to disk] Re-refined 2vz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VZ1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VZ1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VZ1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vz1] [2vz1_A] SWISS-PROT database: [Q01745] Domain organization of [GAOA_GIBZE] by SWISSPFAM Domains found in 2VZ1: [FA58C] [Kelch ] by SMART

Other resources with information on 2VZ1

Community annotation for 2VZ1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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