2W2S Viral Protein date Nov 03, 2008
title Structure Of The Lagos Bat Virus Matrix Protein
authors S.C.Graham, R.Assenberg, O.Delmas, A.Verma, A.Gholami, C.Talbi, R. D.I.Stuart, J.M.Grimes, H.Bourhy
compound source
Molecule: Matrix Protein
Chain: A
Synonym: Lagos Bat Virus Matrix Protein
Engineered: Yes
Organism_scientific: Lagos Bat Virus
Organism_taxid: 38766
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Popins
Other_details: Isolate 8619nga, Genotype 2, Isolated From A Frugivorous Bat In Nigeria (Boulger, L. R., And J. S. Porte 1958. Isolation Of A Virus From Nigerian Fruit Bats.
Trans.R.Soc.Trop.Med.Hyg. 52\: 421-424.)
symmetry Space Group: P 61 2 2
R_factor 0.207 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.870 56.870 187.910 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRhabdovirus matrix protein structures reveal a novel mode of self-association., Graham SC, Assenberg R, Delmas O, Verma A, Gholami A, Talbi C, Owens RJ, Stuart DI, Grimes JM, Bourhy H, PLoS Pathog. 2008 Dec;4(12):e1000251. Epub 2008 Dec 26. PMID:19112510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2w2s.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 2W2S
  • Likely Quarternary Molecular Structure file(s) for 2W2S
  • Structure Factors (68 Kb)
  • Retrieve 2W2S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W2S from S2C, [Save to disk]
  • Re-refined 2w2s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W2S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W2S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W2S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w2s_A] [2w2s]
  • SWISS-PROT database: [Q6JAM6]
  • Domain organization of [MATRX_LBV] by SWISSPFAM
  • Other resources with information on 2W2S
  • Community annotation for 2W2S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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