2W3Y Lipid-Binding Protein date Nov 17, 2008
title Structure Of The Evf Virulence Factor
authors S.Quevillon-Cheruel, N.Leulliot, C.Acosta Muniz C, M.Vincent, J.Gallay, M.Argentini, D.Cornu, F.Boccard, B.Lemaitre, H.Van Tilbeurgh
compound source
Molecule: Virulence Factor
Chain: A, B
Synonym: Evf
Engineered: Yes
Organism_scientific: Pectobacterium Carotovorum Subsp. Carotovorum;
Organism_taxid: 555
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Gold(De3)
Expression_system_vector: Pet9
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.250
length a length b length c angle alpha angle beta angle gamma
69.560 86.715 91.457 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand PLM enzyme
Primary referenceEvf, a virulence factor produced by the Drosophila pathogen Erwinia carotovora is a S-palmitoylated protein with a new fold that binds to lipid vesicles., Quevillon-Cheruel S, Leulliot N, Acosta Muniz C, Vincent M, Gallay J, Argentini M, Cornu D, Boccard F, Lemaitre B, van Tilbeurgh H, J Biol Chem. 2008 Nov 1. PMID:18978353
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2w3y.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (2w3y.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2W3Y
  • CSU: Contacts of Structural Units for 2W3Y
  • Likely Quarternary Molecular Structure file(s) for 2W3Y
  • Structure Factors (281 Kb)
  • Retrieve 2W3Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W3Y from S2C, [Save to disk]
  • Re-refined 2w3y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W3Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W3Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W3Y, from MSDmotif at EBI
  • Fold representative 2w3y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w3y_B] [2w3y_A] [2w3y]
  • SWISS-PROT database: [Q8GCR2]
  • Domain organization of [Q8GCR2_PECCC] by SWISSPFAM
  • Other resources with information on 2W3Y
  • Community annotation for 2W3Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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