2W4F Structural Protein date Nov 25, 2008
title Crystal Structure Of The First Pdz Domain Of Human Scrib1
authors V.Hozjan, E.S.Pilka, A.K.Roos, W.W Yue, C.Phillips, J.Bray, C.Coop E.Salah, J.M.Elkins, J.R.C.Muniz, C.H.Arrowsmith, J.Weigelt, A.M F.Von Delft, C.Bountra, D.A.Doyle, U.Oppermann
compound source
Molecule: Protein Lap4
Chain: A
Fragment: Residues 725-815
Synonym: Pdz Domain Of Scrib1 Variant N1, Protein Scribble Hscrib;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.216 41.829 49.897 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand EDO enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (2w4f.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2W4F
  • CSU: Contacts of Structural Units for 2W4F
  • Likely Quarternary Molecular Structure file(s) for 2W4F
  • Structure Factors (246 Kb)
  • Retrieve 2W4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W4F from S2C, [Save to disk]
  • Re-refined 2w4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2W4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2W4F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W4F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w4f_A] [2w4f]
  • SWISS-PROT database: [Q14160]
  • Domain organization of [SCRIB_HUMAN] by SWISSPFAM
  • Domain found in 2W4F: [PDZ ] by SMART
    • Other resources with information on 2W4F
  • Community annotation for 2W4F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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