2W6X Oxygen Storage date Dec 19, 2008
title Crystal Structure Of Sperm Whale Myoglobin Mutant Yqrf In Co Xenon
authors A.E.Miele, F.Draghi, F.Renzi, G.Sciara, K.A.Johnson, B.Vallone, M. C.Savino
compound source
Molecule: Myoglobin
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tb-1
Expression_system_plasmid: Puc91
symmetry Space Group: P 6
R_factor 0.159 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.781 90.781 45.279 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.73 Å
ligand HEM, SO4, XE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2w6x.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2W6X
  • CSU: Contacts of Structural Units for 2W6X
  • Structure Factors (281 Kb)
  • Retrieve 2W6X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W6X from S2C, [Save to disk]
  • Re-refined 2w6x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2W6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2W6X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W6X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w6x_A] [2w6x]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
    • Other resources with information on 2W6X
  • Community annotation for 2W6X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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