2W7W Oxidoreductase date Jan 06, 2009
title The Crystal Structure Of Iron Superoxide Dismutase From Alii Salmonicida.
authors H.L.Pedersen, N.P.Willassen, I.Leiros
compound source
Molecule: Superoxide Dismutase [Fe]
Chain: A, B
Engineered: Yes
Organism_scientific: Aliivibrio Salmonicida
Organism_taxid: 316275
Strain: Lfi1238
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.205 R_Free 0.239
length a length b length c angle alpha angle beta angle gamma
70.720 70.720 170.250 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand FE enzyme Oxidoreductase E.C. BRENDA
A, B
  • superoxide dismutase activit...

  • Primary referenceThe first structure of a cold-adapted superoxide dismutase (SOD): biochemical and structural characterization of iron SOD from Aliivibrio salmonicida., Pedersen HL, Willassen NP, Leiros I, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Feb 1;65(Pt, 2):84-92. Epub 2009 Jan 31. PMID:19193992
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2w7w.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2W7W
  • CSU: Contacts of Structural Units for 2W7W
  • Likely Quarternary Molecular Structure file(s) for 2W7W
  • Structure Factors (390 Kb)
  • Retrieve 2W7W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W7W from S2C, [Save to disk]
  • Re-refined 2w7w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W7W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W7W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W7W, from MSDmotif at EBI
  • Fold representative 2w7w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w7w_A] [2w7w] [2w7w_B]
  • SWISS-PROT database: [B6ENP9]
  • Domain organization of [B6ENP9_ALISL] by SWISSPFAM
  • Other resources with information on 2W7W
  • Community annotation for 2W7W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science